Statistics

TCRex currently provides prediction models for 100 different epitopes including 93 viral and 7 cancer epitopes. Performance metrics of these prediction models for the latest model version (i.e. version 2023-06-26) are shown in the tables below.

Viral Epitope Version Nr. of sequences Balanced accuracy AUROC Average precision
SARS-CoV-2 ALSKGVHFV 2020-10-28 129 0.53 ± 0.01 0.79 ± 0.03 0.4 ± 0.09
VZV ALSQYHVYV 2022-12-06 69 0.62 ± 0.03 0.74 ± 0.04 0.51 ± 0.06
HCV ARMILMTHF 2019-03-08 66 0.74 ± 0.07 0.86 ± 0.08 0.69 ± 0.12
HCV ATDALMTGY 2019-03-08 177 0.75 ± 0.03 0.91 ± 0.04 0.77 ± 0.06
HCV CINGVCWTV 2019-03-08 131 0.53 ± 0.03 0.75 ± 0.06 0.37 ± 0.11
SARS-CoV-2 EILDITPCSF 2020-10-28 68 0.63 ± 0.03 0.73 ± 0.06 0.46 ± 0.09
HIV EIYKRWII 2019-03-08 185 0.65 ± 0.02 0.75 ± 0.06 0.52 ± 0.04
EBV EPLPQGQLTAY 2019-03-08 36 0.64 ± 0.08 0.91 ± 0.06 0.68 ± 0.18
SARS-CoV-2 FADDLNQLTGY 2020-10-28 70 0.61 ± 0.04 0.7 ± 0.05 0.44 ± 0.11
HIV FLKEKGGL 2019-03-08 156 0.6 ± 0.03 0.76 ± 0.06 0.48 ± 0.1
SARS-CoV-2 FLNGSCGSV 2020-10-28 2332 0.61 ± 0.0 0.86 ± 0.01 0.56 ± 0.02
SARS-CoV-2 FLNRFTTTL 2020-10-28 104 0.54 ± 0.03 0.72 ± 0.07 0.38 ± 0.12
SARS-CoV-2 FLPRVFSAV 2020-10-28 773 0.59 ± 0.02 0.84 ± 0.01 0.51 ± 0.03
SARS-CoV-2 FPPTSFGPL 2020-10-28 621 0.69 ± 0.01 0.85 ± 0.01 0.61 ± 0.01
HIV FPRPWLHGL 2019-03-08 120 0.81 ± 0.02 0.93 ± 0.02 0.83 ± 0.03
HIV FRDYVDRFYKTLRAEQASQE 2019-03-08 367 0.87 ± 0.02 1.0 ± 0.0 0.96 ± 0.01
SARS-CoV-2 FTISVTTEIL 2020-10-28 159 0.55 ± 0.03 0.73 ± 0.03 0.37 ± 0.04
SARS-CoV-2 FVDGVPFVV 2020-10-28 2420 0.54 ± 0.0 0.77 ± 0.01 0.37 ± 0.01
Influenza GILGFVFTL 2019-03-08 3107 0.68 ± 0.01 0.81 ± 0.02 0.59 ± 0.02
EBV GLCTLVAML 2019-03-08 1208 0.66 ± 0.01 0.82 ± 0.02 0.59 ± 0.0
DENV2 GTSGSPIIDK 2019-03-08 60 0.61 ± 0.06 0.74 ± 0.08 0.49 ± 0.04
DENV3/4 GTSGSPIINR 2019-03-08 158 0.73 ± 0.02 0.86 ± 0.03 0.75 ± 0.03
DENV1 GTSGSPIVNR 2019-03-08 165 0.75 ± 0.05 0.88 ± 0.04 0.76 ± 0.06
SARS-CoV-2 HLVDFQVTI 2020-10-28 69 0.61 ± 0.04 0.75 ± 0.06 0.44 ± 0.09
HIV HPKVSSEVHI 2019-03-08 75 0.69 ± 0.07 0.87 ± 0.08 0.7 ± 0.16
EBV HPVGEADYFEY 2019-03-08 32 0.72 ± 0.08 0.86 ± 0.08 0.68 ± 0.13
HCV HSKKKCDEL 2019-03-08 45 0.77 ± 0.09 0.99 ± 0.01 0.93 ± 0.03
SARS-CoV-2 HTTDPSFLGRY 2020-10-28 5000 0.7 ± 0.01 0.9 ± 0.01 0.7 ± 0.02
HIV IIKDYGKQM 2019-03-08 54 0.81 ± 0.07 0.95 ± 0.04 0.84 ± 0.07
SARS-CoV-2 ILGLPTQTV 2020-10-28 198 0.68 ± 0.02 0.83 ± 0.05 0.6 ± 0.08
SARS-CoV-2 ILHCANFNV 2020-10-28 185 0.61 ± 0.02 0.84 ± 0.03 0.52 ± 0.05
VZV ILIEGIFFV 2022-12-06 111 0.63 ± 0.03 0.82 ± 0.04 0.55 ± 0.09
SARS-CoV-2 IPIQASLPF 2020-10-28 104 0.51 ± 0.02 0.74 ± 0.09 0.35 ± 0.11
CMV IPSINVHHY 2019-03-08 85 0.7 ± 0.02 0.84 ± 0.04 0.66 ± 0.06
SARS-CoV-2 IQYIDIGNY 2020-10-28 149 0.56 ± 0.03 0.82 ± 0.04 0.47 ± 0.06
HIV ISPRTLNAW 2019-03-08 58 0.61 ± 0.06 0.84 ± 0.03 0.6 ± 0.12
SARS-CoV-2 ITEEVGHTDLMAAY 2020-10-28 156 0.57 ± 0.02 0.78 ± 0.02 0.49 ± 0.04
SARS-CoV-2 IVDTVSALV 2020-10-28 36 0.51 ± 0.03 0.76 ± 0.12 0.36 ± 0.18
EBV IVTDFSVIK 2019-03-08 46 0.6 ± 0.05 0.83 ± 0.04 0.53 ± 0.05
HIV KAFSPEVIPMF 2019-03-08 210 0.73 ± 0.02 0.9 ± 0.01 0.71 ± 0.03
SARS-CoV-2 KAYNVTQAF 2020-10-28 708 0.61 ± 0.02 0.83 ± 0.01 0.57 ± 0.03
SARS-CoV-2 KEIDRLNEV 2020-10-28 57 0.58 ± 0.02 0.7 ± 0.08 0.43 ± 0.1
SARS-CoV-2 KLPDDFTGCV 2020-10-28 1160 0.59 ± 0.01 0.84 ± 0.01 0.54 ± 0.02
SARS-CoV-2 KLSYGIATV 2020-10-28 2149 0.58 ± 0.0 0.84 ± 0.01 0.51 ± 0.01
HCV KLVALGINAV 2019-03-08 65 0.62 ± 0.05 0.73 ± 0.08 0.51 ± 0.14
SARS-CoV-2 KLWAQCVQL 2020-10-28 266 0.55 ± 0.01 0.8 ± 0.02 0.46 ± 0.05
SARS-CoV-2 KPLEFGATSAAL 2020-10-28 344 0.59 ± 0.02 0.8 ± 0.04 0.49 ± 0.07
HIV KRWIILGLNK 2019-03-08 396 0.65 ± 0.02 0.85 ± 0.04 0.64 ± 0.08
HIV KRWIIMGLNK 2019-03-08 75 0.69 ± 0.05 0.85 ± 0.09 0.73 ± 0.12
SARS-CoV-2 KTSVDCTMYI 2020-10-28 70 0.7 ± 0.05 0.89 ± 0.05 0.72 ± 0.08
SARS-CoV-2 LEPLVDLPI 2020-10-28 367 0.54 ± 0.01 0.76 ± 0.02 0.35 ± 0.05
SARS-CoV-2 LLFNKVTLA 2020-10-28 39 0.51 ± 0.03 0.76 ± 0.04 0.37 ± 0.1
YellowFeverVirus LLWNGPMAV 2019-03-08 474 0.66 ± 0.01 0.79 ± 0.01 0.53 ± 0.03
SARS-CoV-2 LPPAYTNSF 2020-10-28 127 0.53 ± 0.02 0.82 ± 0.03 0.45 ± 0.06
HIV LPPIVAKEI 2019-03-08 62 0.79 ± 0.04 0.9 ± 0.05 0.78 ± 0.06
Influenza LPRRSGAAGA 2019-03-08 2137 0.54 ± 0.01 0.84 ± 0.01 0.4 ± 0.02
SARS-CoV-2 MPASWVMRI 2020-10-28 477 0.62 ± 0.02 0.82 ± 0.01 0.53 ± 0.01
SARS-CoV-2 NLDSKVGGNY 2020-10-28 45 0.73 ± 0.06 0.96 ± 0.03 0.85 ± 0.05
SARS-CoV-2 NLNESLIDL 2020-10-28 132 0.59 ± 0.03 0.74 ± 0.02 0.42 ± 0.05
CMV NLVPMVATV 2019-03-08 4812 0.56 ± 0.0 0.72 ± 0.01 0.39 ± 0.01
SARS-CoV-2 NQKLIANQF 2020-10-28 51 0.76 ± 0.02 0.95 ± 0.02 0.78 ± 0.07
Influenza PKYVKQNTLKLAT 2019-03-08 292 0.52 ± 0.01 0.72 ± 0.02 0.36 ± 0.05
SARS-CoV-2 QECVRGTTVL 2020-10-28 147 0.71 ± 0.02 0.85 ± 0.02 0.66 ± 0.04
CMV QIKVRVKMV 2019-03-08 36 0.5 ± 0.0 0.79 ± 0.05 0.4 ± 0.09
HIV QVPLRPMTYK 2019-03-08 48 0.64 ± 0.04 0.77 ± 0.11 0.51 ± 0.16
CMV QYDPVAALF 2019-03-08 41 0.7 ± 0.06 0.82 ± 0.06 0.6 ± 0.06
EBV RAKFKQLL 2019-03-08 262 0.65 ± 0.02 0.89 ± 0.01 0.69 ± 0.04
HIV RFYKTLRAEQASQ 2019-03-08 210 0.9 ± 0.03 0.99 ± 0.0 0.96 ± 0.01
HIV RLRPGGKKK 2019-03-08 31 0.73 ± 0.06 0.89 ± 0.09 0.73 ± 0.2
HSV2 RPRGEVRFL 2019-03-08 63 0.77 ± 0.04 0.92 ± 0.05 0.84 ± 0.08
SARS-CoV-2 RQLLFVVEV 2020-10-28 841 0.57 ± 0.01 0.83 ± 0.01 0.46 ± 0.02
HIV RYPLTFGWCF 2019-03-08 30 0.52 ± 0.03 0.72 ± 0.13 0.42 ± 0.12
SARS-CoV-2 SEISMDNSPNL 2020-10-28 95 0.52 ± 0.01 0.79 ± 0.05 0.45 ± 0.13
SARS-CoV-2 SEPVLKGVKL 2020-10-28 80 0.57 ± 0.02 0.79 ± 0.05 0.38 ± 0.1
SARS-CoV-2 SEVGPEHSLAEY 2020-10-28 250 0.54 ± 0.01 0.79 ± 0.01 0.42 ± 0.05
HTLV1 SFHSLHLLF 2019-03-08 131 0.68 ± 0.03 0.81 ± 0.08 0.63 ± 0.08
SARS-CoV-2 SSNVANYQK 2020-10-28 74 0.61 ± 0.04 0.77 ± 0.04 0.45 ± 0.08
SARS-CoV-2 TLDSKTQSL 2020-10-28 107 0.83 ± 0.06 0.97 ± 0.02 0.88 ± 0.06
SARS-CoV-2 TLIGDCATV 2020-10-28 467 0.55 ± 0.02 0.73 ± 0.03 0.36 ± 0.04
SARS-CoV-2 TLVPQEHYV 2020-10-28 154 0.53 ± 0.03 0.72 ± 0.02 0.42 ± 0.07
HIV TPGPGVRYPL 2019-03-08 86 0.68 ± 0.04 0.88 ± 0.03 0.74 ± 0.07
SARS-CoV-2 TPINLVRDL 2020-10-28 249 0.64 ± 0.02 0.81 ± 0.03 0.53 ± 0.04
HIV TPQDLNTML 2019-03-08 159 0.81 ± 0.02 0.94 ± 0.04 0.87 ± 0.06
CMV TPRVTGGGAM 2019-03-08 258 0.7 ± 0.02 0.88 ± 0.03 0.75 ± 0.04
SARS-CoV-2 VLWAHGFEL 2020-10-28 695 0.65 ± 0.02 0.85 ± 0.02 0.6 ± 0.04
CMV VTEHDTLLY 2019-03-08 277 0.54 ± 0.0 0.78 ± 0.02 0.39 ± 0.04
SARS-CoV-2 WICLLQFAY 2020-10-28 515 0.64 ± 0.02 0.81 ± 0.02 0.56 ± 0.06
SARS-CoV-2 YFPLQSYGF 2020-10-28 357 0.53 ± 0.01 0.79 ± 0.03 0.4 ± 0.04
SARS-CoV-2 YLDAYNMMI 2020-10-28 197 0.62 ± 0.03 0.74 ± 0.03 0.42 ± 0.05
SARS-CoV-2 YLNTLTLAV 2020-10-28 390 0.58 ± 0.02 0.8 ± 0.01 0.46 ± 0.04
SARS-CoV-2 YLQPRTFLL 2020-05-26 315 0.91 ± 0.01 0.97 ± 0.01 0.92 ± 0.01
CMV YSEHPTFTSQY 2019-03-08 74 0.59 ± 0.06 0.93 ± 0.04 0.71 ± 0.06
EBV YVLDHLIVV 2019-03-08 103 0.52 ± 0.02 0.76 ± 0.07 0.44 ± 0.09
Cancer Epitope Version Nr. of sequences Balanced accuracy AUROC Average precision
Melanoma AMFWSVPTV 2019-03-08 82 0.59 ± 0.04 0.78 ± 0.04 0.48 ± 0.12
Melanoma EAAGIGILTV 2019-03-08 266 0.69 ± 0.03 0.9 ± 0.01 0.74 ± 0.01
Melanoma ELAGIGILTV 2019-03-08 1035 0.54 ± 0.0 0.72 ± 0.01 0.37 ± 0.03
Melanoma FLYNLLTRV 2019-03-08 61 0.63 ± 0.08 0.87 ± 0.03 0.59 ± 0.1
Multiple Myeloma LLLGIGILV 2019-03-08 233 0.58 ± 0.01 0.77 ± 0.04 0.44 ± 0.06
Tumor associated antigen (WT1) RMFPNAPYL 2023-06-26 101 0.58 ± 0.03 0.69 ± 0.11 0.49 ± 0.15
Tumor associated antigen (WT1) VLDFAPPGA 2023-06-26 1262 0.56 ± 0.01 0.8 ± 0.02 0.49 ± 0.03