New: Integrate TCRex predictions with single cell RNA+TCR data analyses using our new STEGO tool!
- TCRex v0.3.4: August 26, 2024
- Cross-platform integration with STEGO.R for single cell analysis
- Switched from Google Analytics to Plausible Analytics
- TCRex v0.3.3: December 06, 2022
- Addition of the AIRR file format
- Allow parsing of IMGT alleles in the standard IMGT format (e.g. TRBV12-3*00) or alternative format where '*' is replaced by ':' (e.g. TRBV12-3:00)
- Update parsing and filtering of TCR entries: this might have an impact on the results
- Allow usage of custom background data set when using pre-trained models
- Add Benjamini-Hochberg correction on the p-values of the enrichment results
- TCRex v0.3.2: October 12, 2020
- The upper limit of the enrichment threshold was changed from 5% to 1%
- The upper limit of the BPR threshold was changed from 100% to 1%
- The download of all prediction results is no longer available. Only filtered results can still be downloaded.
- Update home page: checkboxes for epitopes that are not present in an older selected model version are now hidden
- Stability, performance, and usability improvements
- TCRex v0.3.1: September 8, 2020
- Update results page and output file
- Stability, performance, and usability improvements
- TCRex v0.3.0: July 4, 2019
- Addition of epitope-specificity enrichment analysis
- Renaming of FPR to BPR
- Default BPR threshold is 0.01%. (Previously, a default FPR threshold of 0.1% was used.)
- TCRex v0.2.1: May 11, 2019
- Addition of IMGT parsing capabilities
- Retraining of classifiers with additional training data
- TCRex v0.2.0: October 17, 2018
- Stability, performance, and usability improvements
- Functionality to train custom epitope prediction models
- Update output file
- Retraining of classifiers
- TCRex v0.1.0: July 19, 2018
- First (beta) version of the TCRex web tool